PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69651.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 296aa    MW: 32170.7 Da    PI: 6.0356
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69651.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.43.5e-17194228135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C++ kTp+WR gp g+ktLCnaCG+++++ +l
  EPS69651.1 194 CLHCQSEKTPQWRTGPMGPKTLCNACGVRFKSGRL 228
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.3E-7619276IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.398188224IPR000679Zinc finger, GATA-type
SMARTSM004019.9E-15188238IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-13191225IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.38E-13192251No hitNo description
CDDcd002022.49E-12193240No hitNo description
PROSITE patternPS003440194219IPR000679Zinc finger, GATA-type
PfamPF003206.3E-15194228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MECFGTDYAA EFSSGDGGGG GGGGAHFMVD DLLDFSKEDD ETFLEGTPVD SCNSSISGGG  60
EAHFNGNVSC RSVDEPQFTA NDLCVPNDDI EELEWLSNFV EESFSTDDLP FIAAPIPSLS  120
SWKAGASSPV TARYSPPPPS IFSSDVSVPG KARSKRSRAP PCDWSSRLLH VNPSTPTANS  180
AKKREPAESP CRKCLHCQSE KTPQWRTGPM GPKTLCNACG VRFKSGRLVP EYRPAASPTF  240
VSNKHSNSHR KVLELRRQTE IQQQQQQLVS HVPLFNGCDG FLLRRHINGQ DLSHVI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022851153.11e-119GATA transcription factor 9-like
SwissprotO826322e-68GATA9_ARATH; GATA transcription factor 9
TrEMBLS8CXC50.0S8CXC5_9LAMI; GATA transcription factor
STRINGMigut.I00908.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-69GATA transcription factor 9
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]