PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69652.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 175aa    MW: 19274.9 Da    PI: 8.8549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69652.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-181665255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr ++ +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  EPS69652.1 16 IYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALSIKG 65
                69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-131565IPR001471AP2/ERF domain
CDDcd000184.54E-331573No hitNo description
Gene3DG3DSA:3.30.730.106.6E-321674IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-221674IPR016177DNA-binding domain
SMARTSM003805.8E-381679IPR001471AP2/ERF domain
PROSITE profilePS5103223.421673IPR001471AP2/ERF domain
PRINTSPR003671.1E-101728IPR001471AP2/ERF domain
PRINTSPR003671.1E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
KKVKKRSKDC GTKHPIYRGV RMRSWGKWVS EIRQPRKKSR IWLGTYPTAE MAARAHDVAA  60
LSIKGNSAVL NFPQLTHSLP RPASLSPRDV QAAAAKAAAM AEKQVVPLSG ATIAAAATSS  120
DHDLSEIFEL PNLEESIRPG NDLTAFVEPP EGWLQPTWCP ELDEDLCHYF SDQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-20774573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022843034.12e-63dehydration-responsive element-binding protein 3-like
SwissprotQ9M0805e-51ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLS8EAS71e-127S8EAS7_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009596664.17e-57(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]