PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69830.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 126aa    MW: 15220 Da    PI: 5.8597
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69830.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-213184356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++t+eq++ Le+ Fe+++++  e++ eLAk lgL+ rqV +WFqNrRa++k
  EPS69830.1 31 KKRRLTAEQVHLLERSFEEDNKLEPERKSELAKGLGLQPRQVAIWFQNRRARWK 84
                5678*************************************************9 PP
2HD-ZIP_I/II129.21.7e-4130120191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl++eqv+lLE+sFee++kLeperK+ela+ Lglqprqva+WFqnrRAR+k+kqlEkdy+ Lk++y +l ++ e++  ++ +L++e+
   EPS69830.1  30 EKKRRLTAEQVHLLERSFEEDNKLEPERKSELAKGLGLQPRQVAIWFQNRRARWKAKQLEKDYDDLKSSYHSLLSDYESILLQNGKLKSEI 120
                  69*************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.8482686IPR001356Homeobox domain
SMARTSM003892.8E-192990IPR001356Homeobox domain
SuperFamilySSF466892.35E-203197IPR009057Homeodomain-like
PfamPF000462.9E-183184IPR001356Homeobox domain
CDDcd000861.41E-143187No hitNo description
Gene3DG3DSA:1.10.10.601.4E-223293IPR009057Homeodomain-like
PRINTSPR000319.4E-75766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000319.4E-76682IPR000047Helix-turn-helix motif
PfamPF021839.3E-1486126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
DDSTKKRPFF TVASEDYYYD DEYFDDQLPE KKRRLTAEQV HLLERSFEED NKLEPERKSE  60
LAKGLGLQPR QVAIWFQNRR ARWKAKQLEK DYDDLKSSYH SLLSDYESIL LQNGKLKSEI  120
VWLREK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849408.13e-57PREDICTED: homeobox-leucine zipper protein HAT5
RefseqXP_015573608.11e-57homeobox-leucine zipper protein HAT5
RefseqXP_015967037.12e-57homeobox-leucine zipper protein HAT5
RefseqXP_016203259.14e-57homeobox-leucine zipper protein HAT5
RefseqXP_025701506.14e-57homeobox-leucine zipper protein HAT5
RefseqXP_025701507.14e-57homeobox-leucine zipper protein HAT5
SwissprotQ022834e-50HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLS8CSP03e-85S8CSP0_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_002517348.14e-57(Ricinus communis)
STRINGMigut.H00128.1.p1e-56(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-52homeobox 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]