PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS69950.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 138aa MW: 15320.2 Da PI: 6.7525

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS69950.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.8	2e-39	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk l+rkC+++C +apyf +++p kfa vhk+FGasnv+k+l+ +pee+re+a++slvyeA +r++dPvyG++g i +lq+++ +l+++l+l+++ EPS69950.1 7 SCAACKSLKRKCNQNCQFAPYFRSDDPIKFAHVHKVFGASNVSKILSGVPEEHREEAVNSLVYEAAVRLQDPVYGCIGAIAALQRRMVELQNDLNLARA 105 6**********************************************************************************************9987 PP DUF260 100 e 100 + EPS69950.1 106 R 106 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.311	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-38	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
PSSSSSSCAA CKSLKRKCNQ NCQFAPYFRS DDPIKFAHVH KVFGASNVSK ILSGVPEEHR 60 EEAVNSLVYE AAVRLQDPVY GCIGAIAALQ RRMVELQNDL NLARARIASY RNFLFDYASW 120 NDEDADDGAA AFLQQFPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-39	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-39	3	110	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019151098.1	3e-57	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	1e-51	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	S8CSY2	2e-97	S8CSY2_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009786680.1	3e-55	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-51	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]