PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70002.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NAC

Protein Properties

Length: 230aa MW: 26213.8 Da PI: 9.6307

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70002.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.1e-52	4	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL kkv+++ ++ +i+evd++k+ePw+Lp k++ +ekew+fFs rd+ky+tg r+nrat++gyWkatgkdke+++ + EPS70002.1 4 LPPGFRFHPTDEELITHYLSKKVADHAFSS-VAIAEVDMNKIEPWELPWKTRIGEKEWFFFSVRDRKYPTGMRTNRATAAGYWKATGKDKEIFKGsCRV 101 79***********************998.67***********888999***********************************976677 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vglkktLvfy grap+gekt+Wv heyrl EPS70002.1 102 AVGLKKTLVFYLGRAPRGEKTNWVSHEYRL 131 8*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-56	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	56.722	4	151	IPR003441	NAC domain
Pfam	PF02365	4.7E-27	5	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDLLPPGFRF HPTDEELITH YLSKKVADHA FSSVAIAEVD MNKIEPWELP WKTRIGEKEW 60 FFFSVRDRKY PTGMRTNRAT AAGYWKATGK DKEIFKGSCR VAVGLKKTLV FYLGRAPRGE 120 KTNWVSHEYR LNHHSSHHQR NEWVISRVFQ KSSGGKKVHI STLISATATA TAGPSMSSNS 180 LTVPETVRHV HCFSELPPPM EFLPTPVHLT SDTWQNDIVG SSSDFDCIWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-57	4	157	20	174	NAC domain-containing protein 19
3swm_B	8e-57	4	157	20	174	NAC domain-containing protein 19
3swm_C	8e-57	4	157	20	174	NAC domain-containing protein 19
3swm_D	8e-57	4	157	20	174	NAC domain-containing protein 19
3swp_A	8e-57	4	157	20	174	NAC domain-containing protein 19
3swp_B	8e-57	4	157	20	174	NAC domain-containing protein 19
3swp_C	8e-57	4	157	20	174	NAC domain-containing protein 19
3swp_D	8e-57	4	157	20	174	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625550.1	2e-92	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_016463159.1	2e-92	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLR3	5e-85	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	S8EBR6	1e-171	S8EBR6_9LAMI; Uncharacterized protein
STRING	XP_009625550.1	6e-92	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	9e-86	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]