PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70172.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

ZF-HD

Protein Properties

Length: 129aa MW: 14729.7 Da PI: 9.5956

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70172.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	80.7	1.8e-25	3	52	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++ Y+eCl+NhAaslG++a+DGCgEf+ + g +l CaACgCHRnFHR+ EPS70172.1 3 EYYYRECLRNHAASLGSYATDGCGEFTGA-GG----GSLSCAACGCHRNFHRKLA 52 678***********************9.33....59************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.9E-22	5	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.271	6	51	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.9E-21	6	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-9	6	50	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.9E-25	56	128	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.97E-16	56	128	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.0E-27	66	125	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEEYYYRECL RNHAASLGSY ATDGCGEFTG AGGGSLSCAA CGCHRNFHRK LAADCRSTPS 60 PEPSRKKRIR TKFTSEQKEK MVGFAEGLGW KLQRIRKKEE DEIERFCSGI GITRRVFKIW 120 IHNHKTTHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-17	67	127	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073164.1	2e-54	zinc-finger homeodomain protein 7-like
Swissprot	A2XLF4	2e-33	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	2e-33	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
Swissprot	Q9M9S0	8e-33	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	S8EC70	2e-91	S8EC70_9LAMI; Uncharacterized protein
STRING	VIT_17s0000g00810.t01	1e-52	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11865	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60480.1	7e-25	homeobox protein 26

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]