PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70176.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 239aa    MW: 26970.8 Da    PI: 10.3401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70176.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09122169455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  EPS70176.1 122 SHSLAERVRREKISERMKFLQSLVPGC----DKVTGKALMLDEIINYVQSLQ 169
                 8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.79E-10116173No hitNo description
SuperFamilySSF474598.51E-17116184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16118186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-6122169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-9124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MATSSSPFHH YPHLLQSDPL SVPIAKTNHR HSAAAARDHS SSIVTDTLLL LHPDVNIASS  60
KKRSFPAADL RPSPTSEEFV DFVSPRNGKR KSKTKKVKKE ERKGETGGYI HVRARRGQAT  120
DSHSLAERVR REKISERMKF LQSLVPGCDK VTGKALMLDE IINYVQSLQT QVELLSMKLA  180
SVNPTFYDFG MDIESFMVQS DQDLLNLGSL EHNLPQTFST FQQPVIPPIF HQRVRKPRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311839.17e-61transcription factor bHLH137-like
SwissprotQ93W882e-51BH137_ARATH; Transcription factor bHLH137
TrEMBLS8CYS71e-176S8CYS7_9LAMI; Uncharacterized protein
STRINGXP_009786910.13e-57(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]