PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70194.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family CO-like
Protein Properties Length: 262aa    MW: 29427.6 Da    PI: 6.6896
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70194.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071149540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40
                 C+ ++    + +C+ +  +lC++C + +H     H++v
  EPS70194.1 11 SCDACNAAASSVYCRADLAYLCNSCDSRIHAAahrHERV 49
                7******99********************8556446665 PP
2CCT69.96.7e-24212255144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRY+eK+k+RkFeK irY+sRKa+Ae+RpR+KGrFvk++
  EPS70194.1 212 REARVLRYREKKKNRKFEKMIRYASRKAYAETRPRIKGRFVKRT 255
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.296751IPR000315B-box-type zinc finger
CDDcd000212.13E-51049No hitNo description
PfamPF006431.8E-51151IPR000315B-box-type zinc finger
PfamPF062036.5E-18212254IPR010402CCT domain
PROSITE profilePS5101716.549212254IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLKLKNGSGV SCDACNAAAS SVYCRADLAY LCNSCDSRIH AAAHRHERVM ICASCARAPA  60
VFRSMDDPSS SLCSSCYFED SSDRRHYRPP FLTLPDNTDG EIDIKDEDDE QEAASWLLLN  120
DGNLNLDDYD SCSNFDESNN SQSNHHQDYS VPQKHCFISL GLDYEGSKTG NAYSPAALYQ  180
SSFFTSDVAK VPETSAENSG DPFSRPACVM DREARVLRYR EKKKNRKFEK MIRYASRKAY  240
AETRPRIKGR FVKRTDVHIA CS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430882.14e-61zinc finger protein CONSTANS-LIKE 2
SwissprotQ965022e-53COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLS8CSF00.0S8CSF0_9LAMI; Uncharacterized protein
STRINGXP_006430882.11e-60(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.13e-40CONSTANS-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]