PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70299.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

G2-like

Protein Properties

Length: 177aa MW: 20335.4 Da PI: 9.8533

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70299.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.4	3.7e-34	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLHe+Fveav++LGGsekAtPk il+lmkv++Lt++hvkSHLQkYR+ EPS70299.1 41 KQRMRWTQELHESFVEAVNKLGGSEKATPKGILKLMKVDSLTIYHVKSHLQKYRT 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.17	38	98	IPR017930	Myb domain
SuperFamily	SSF46689	1.52E-19	39	95	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-31	40	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-26	41	95	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-10	43	94	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-25	128	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0055063	Biological Process	sulfate ion homeostasis
GO:0071486	Biological Process	cellular response to high light intensity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
FQMRKEPINI SVQQSLIPKQ PPGEVFSGIG QSSSMNIAPA KQRMRWTQEL HESFVEAVNK 60 LGGSEKATPK GILKLMKVDS LTIYHVKSHL QKYRTARYKP ETNVEDSSEK KSSTMPELSS 120 LDLKAGIDIS EALRLQIEVQ KRLHEQLEIQ RNLQLRIEEQ GRYLQMMFER QCKPGID

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-31	40	99	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-31	40	99	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-31	40	99	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-31	40	99	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-31	40	99	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-31	40	99	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-31	40	99	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-31	40	99	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250\|UniProtKB:Q10LZ1}.
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:18263782, ECO:0000269\|PubMed:26082401}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by Pi starvation. {ECO:0000269\|PubMed:18263782, ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022890592.1	7e-92	protein PHOSPHATE STARVATION RESPONSE 1-like
Swissprot	B8ANX9	3e-68	PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
Swissprot	Q10LZ1	3e-68	PHR1_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBL	S8CSL4	1e-127	S8CSL4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.D00466.1.p	1e-85	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2753	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	1e-69	phosphate starvation response 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]