PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70314.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 189aa    MW: 21609.6 Da    PI: 6.2833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70314.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-071559655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +  +rrRR ++++ +  Lr+l+P        K++Ka+i   A  Y+++Lq
  EPS70314.1 15 SRSDRRRRGKMKEDLYALRSLVPYM-----SKMDKASIAGDAASYLQELQ 59
                5678********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-14674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.732958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-131075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-71564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-51659IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-52363No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEDEDSGRKK KSDRSRSDRR RRGKMKEDLY ALRSLVPYMS KMDKASIAGD AASYLQELQT  60
QAENLKAEIA SIRRSLVYED AYSFAEMRAA DLYPSLLTHK IYKMDVVQLD KREYCAQLVS  120
SNGQGAATSI FKALHTLSLA GFDIPSFHMA VSQRNYFLTF PFIVTMDDEG DWKLWIASVL  180
LMEGFEFDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721RKKKSDRSRSDRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022874306.14e-46transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLS8CSM51e-137S8CSM5_9LAMI; Uncharacterized protein
STRINGMigut.D02290.1.p4e-42(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37822340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.16e-32FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]