PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70357.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

G2-like

Protein Properties

Length: 157aa MW: 17608.1 Da PI: 7.835

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70357.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.8e-34	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+++gLt++hvkSHLQkYRl EPS70357.1 15 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRIMGLQGLTIYHVKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.517	12	72	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-18	14	70	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-32	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-26	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	5.4E-10	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-23	101	146	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
DSTPGGSSNT SMASKQRLRW TNELHERFVD AVAQLGGPDR ATPKGVLRIM GLQGLTIYHV 60 KSHLQKYRLA KYLPDSSTDV IIEEKSESGD VLSALDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLELR IEAQGKYLKK IIEEQRRLSE VLEAPPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-26	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-26	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-26	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-26	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012848510.1	1e-88	PREDICTED: protein PHR1-LIKE 1-like isoform X1
Refseq	XP_012848511.1	1e-88	PREDICTED: protein PHR1-LIKE 1-like isoform X1
Refseq	XP_012848512.1	8e-89	PREDICTED: protein PHR1-LIKE 1-like isoform X2
Swissprot	Q9SJW0	7e-87	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	S8ECW6	1e-109	S8ECW6_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M01479.1.p	3e-88	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	3e-89	G2-like family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]