PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70373.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MIKC_MADS

Protein Properties

Length: 142aa MW: 16084.4 Da PI: 9.538

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70373.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.5	1.7e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie++s r+vtfskRr gilKKA+ELSvLCdaeva iifs +g+lye+ss EPS70373.1 9 KRIEDSSSRHVTFSKRRSGILKKAFELSVLCDAEVAAIIFSAKGRLYEFSS 59 79***********************************************96 PP
2	K-box	39.7	2e-14	83	142	8	69
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + +++a++ ++el+k ++++ L+ + llGe+L+++s++eL++Le+qL +s++k+RskK EPS70373.1 83 KkNAAAEQTDPETELRKTLERVDDLRGK---LLGEKLDECSIEELEKLENQLATSISKVRSKK 142 2366677777889999999999999997...*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.992	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.9E-38	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.28E-35	3	71	No hit	No description
SuperFamily	SSF55455	8.5E-30	3	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-29	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	7.965	87	142	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.6E-10	95	142	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MVRGKIQIKR IEDSSSRHVT FSKRRSGILK KAFELSVLCD AEVAAIIFSA KGRLYEFSSS 60 SSIDETINRY MMNDINASQT IKKKNAAAEQ TDPETELRKT LERVDDLRGK LLGEKLDECS 120 IEELEKLENQ LATSISKVRS KK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
5f28_A	1e-18	1	70	1	69	MEF2C
5f28_B	1e-18	1	70	1	69	MEF2C
5f28_C	1e-18	1	70	1	69	MEF2C
5f28_D	1e-18	1	70	1	69	MEF2C
6c9l_A	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	1e-18	1	70	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem. Regulates auxin transport and gradients in the root meristematic cells via direct regulation of the auxin efflux carrier PIN1 and PIN4 gene expression. Binds specifically to the CArG-box DNA sequences in the promoter regions of PIN1 and PIN4 genes (PubMed:24121311). Involved in the regulation of shoot apical meristem (SAM) cell identities and transitions. Promotes flowering transition and participates in flower meristem maintenance and determinacy. Positively regulates TFL1 and WUS expression. Binds directly to the TFL1 regulatory sequences (PubMed:25636918). {ECO:0000269\|PubMed:24121311}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:24121311}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081162.1	2e-49	MADS-box protein SOC1
Swissprot	Q38838	1e-45	AGL14_ARATH; Agamous-like MADS-box protein AGL14
TrEMBL	S8E3W7	6e-97	S8E3W7_9LAMI; Uncharacterized protein (Fragment)
STRING	GLYMA17G14191.1	1e-44	(Glycine max)
STRING	XP_007155575.1	1e-45	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	6e-48	AGAMOUS-like 14

Publications ? help Back to Top
Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol., 2004. 136(1): p. 2621-32 [PMID:15375207] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]