PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70519.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 134aa    MW: 14942.9 Da    PI: 8.1902
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70519.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-0878122243
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksr 43 
                        W++ Ed+ l++a k ++++    +W++Ia  +  g+t  +c+ r
       EPS70519.1  78 VEWSPGEDLALLNALKAFPKNttplRWEKIAGSVT-GKTKSDCIKR 122
                      68********************************9.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-871129IPR009057Homeodomain-like
PROSITE profilePS500906.57472122IPR017877Myb-like domain
SMARTSM007171.6E-776129IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-877125IPR009057Homeodomain-like
PfamPF002498.0E-777122IPR001005SANT/Myb domain
CDDcd001678.08E-679122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
GKPGRWEEDI ARCLDGDSEV GTVIEKAKEL GVKKSRDEED SYDKFLKQRK SIDSGMLRKT  60
NGDGDALDEE EEAKKGKVEW SPGEDLALLN ALKAFPKNTT PLRWEKIAGS VTGKTKSDCI  120
KRVAELKKDF RSAK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082375.18e-36dnaJ homolog subfamily C member 2-like
RefseqXP_011082376.18e-36dnaJ homolog subfamily C member 2-like
SwissprotQ9ASQ27e-30MAMYB_ARATH; Transcription factor MAMYB
TrEMBLS8CTC41e-89S8CTC4_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_010055375.15e-35(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126681011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.11e-30MYB_related family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]