PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70538.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 128aa    MW: 13848.7 Da    PI: 8.5035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70538.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001992110220
                 EETTTTEEESSHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                  C+ Cgk F+++  L  H+
  EPS70538.1  92 ICKQCGKGFRSPKALCGHM 110
                 6*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.8830IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-4830IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974830IPR007087Zinc finger, C2H2
SuperFamilySSF576673.31E-10830No hitNo description
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576673.31E-1086113No hitNo description
SMARTSM003550.1191113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.03491118IPR007087Zinc finger, C2H2
PfamPF139125.7E-692115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-493115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEEQDWKFIC RFCEKKFPCG KSLGGHTRSH GVAVSSDNSV ESSDLGAASV SVSVSASASY  60
GLRENPKKSW RASSGFDSKA PPLLIPHEKM MICKQCGKGF RSPKALCGHM ACHSEKDRGS  120
FFKDGDGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847770.18e-34PREDICTED: uncharacterized protein LOC105967696
RefseqXP_022852135.11e-33uncharacterized protein LOC111373804
TrEMBLS8E4791e-88S8E479_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.L01205.1.p3e-33(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-25C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]