PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70578.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 100aa    MW: 11053.4 Da    PI: 5.731
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70578.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-091242347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia++++ gRt++++k++w+++
       EPS70578.1  1 RWSLIAARLP-GRTDNEIKNYWNTH 24
                     4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-8135IPR009057Homeodomain-like
PROSITE profilePS5129418.036129IPR017930Myb domain
PfamPF002491.8E-7124IPR001005SANT/Myb domain
CDDcd001673.14E-7125No hitNo description
Gene3DG3DSA:1.10.10.603.6E-13139IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
RWSLIAARLP GRTDNEIKNY WNTHIKRKLV SRGIDPQTHK PVGCSSSTSP RSSPNPPPPP  60
SMDLEALPMQ AGEEESAENR SVLSEELAAE IDLELSIRPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097098.11e-28myb-related protein 308
TrEMBLS8E4A62e-65S8E4A6_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_008781556.14e-24(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-22myb domain protein 7
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]