PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70590.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB_related

Protein Properties

Length: 128aa MW: 15060.7 Da PI: 5.3177

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70590.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35	3.3e-11	35	76	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ e +++a++q+G++ ++I + ++ g+t+ q+k+++ k EPS70590.1 35 RWSKQDTETFYEAIRQFGTD-LSLIQQLFP-GLTRQQIKLKYKK 76 8*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	6.4E-27	26	110	No hit	No description
SMART	SM00717	7.4E-6	32	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-5	35	76	IPR009057	Homeodomain-like
CDD	cd00167	9.42E-6	35	76	No hit	No description
SuperFamily	SSF46689	2.32E-9	35	83	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
SNRENEVGEG DAAAVEDATL YFNYQTYMDK PRPIRWSKQD TETFYEAIRQ FGTDLSLIQQ 60 LFPGLTRQQI KLKYKKEERQ HPFRLHEAVT NRPKDHSHFK MVIERLQQIA AEQNKKEDEE 120 EGGETSEG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619096.1	7e-49	PREDICTED: transcription factor TFIIIB component B'' homolog isoform X3
Refseq	XP_018631457.1	7e-49	PREDICTED: transcription factor TFIIIB component B'' homolog isoform X3
Refseq	XP_019226581.1	7e-49	PREDICTED: uncharacterized protein LOC109208037 isoform X1
Refseq	XP_019226582.1	7e-49	PREDICTED: uncharacterized protein LOC109208037 isoform X1
Refseq	XP_020553620.1	4e-49	transcription factor TFIIIB component B''-like isoform X3
TrEMBL	S8CUX2	1e-90	S8CUX2_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009619094.1	3e-48	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5902	23	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-32	MYB_related family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]