PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70616.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TALE
Protein Properties Length: 287aa    MW: 32339.2 Da    PI: 5.9654
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70616.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.8e-082252582154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  EPS70616.1 225 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 258
                 569*****************************87 PP
2ELK29.51.7e-10179200122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  EPS70616.1 179 ELKHELKQGYKEKIVDIREEIL 200
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.7E-181357IPR005540KNOX1
PfamPF037903.1E-151556IPR005540KNOX1
SMARTSM012564.0E-2466122IPR005541KNOX2
PfamPF037913.4E-1772121IPR005541KNOX2
PfamPF037896.1E-7179200IPR005539ELK domain
SMARTSM011886.1E-4179200IPR005539ELK domain
PROSITE profilePS512139.969179199IPR005539ELK domain
PROSITE profilePS5007111.677199262IPR001356Homeobox domain
SMARTSM003893.5E-11201266IPR001356Homeobox domain
SuperFamilySSF466893.89E-16201266IPR009057Homeodomain-like
CDDcd000863.16E-12202261No hitNo description
Gene3DG3DSA:1.10.10.602.5E-25206263IPR009057Homeodomain-like
PfamPF059202.9E-18219258IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
GADVGGGTDW EREKCKADVL SHPLYDELFS AHVACLRIAT PVDQLPRIDA QLAQSHQVVA  60
KYSALGHGQT PLDEKDLDHF MTHYVLLLSS FKEQLQQHVR VHAMEAVMAC WDLEQSLQSF  120
TGVAPGEGTG ATMSDEDEDQ AESETNLFDE TLDGMDVMGF GPLIPSESER SLMERVRQEL  180
KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSVLKAWW QAHSKWPYPT EEDKARLVQE  240
TGLQLKQINN WFINQRKRNW HSNPSSSSQK SKRKSGGSGD KSSANII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-13202266872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084049.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotO223001e-164LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLS8CZT10.0S8CZT1_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009770424.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-160KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]