PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70723.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 154aa MW: 16277.3 Da PI: 8.7032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70723.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +Fs+ L H+r+H EPS70723.1 131 HECSVCGSVFSSGQALGGHMRRH 153 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.3E-12	73	98	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.87E-9	73	96	No hit	No description
PROSITE profile	PS50157	10.471	74	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.8	74	96	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.87E-9	126	153	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.2E-5	128	153	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.658	131	154	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.2E-12	131	154	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	131	153	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	133	153	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
KGKGKKAAIS SETSGGEDCS GSISSSAMST TTREDEDMAN CLILLSHGGF RPPAGCGISG 60 GRFGEVEKVG VFVYECKTCL RAFSSFQALG GHRASHRKPK ADDRRKSPAE DYDEKVAVPP 120 AASLAQKEKI HECSVCGSVF SSGQALGGHM RRHR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089966.1	1e-43	zinc finger protein ZAT5-like
TrEMBL	S8E4M5	1e-107	S8E4M5_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010542577.1	3e-36	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-33	C2H2 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]