PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70731.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 118aa MW: 12887.5 Da PI: 9.9978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70731.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	11	33	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+++F + L H +H EPS70731.1 11 FACKTCDRRFASFQALGGHRASH 33 78*********999999888887 PP
2	zf-C2H2	11.2	0.0012	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H EPS70731.1 54 HECSICGVEFALGQALGGHMRRH 76 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.94E-9	10	76	No hit	No description
Pfam	PF13912	9.0E-11	11	35	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.785	11	38	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.52	11	33	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	13	33	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.2E-10	53	78	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.28	54	76	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.099	54	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
SYEDSISGRE FACKTCDRRF ASFQALGGHR ASHKRPRLEG PPPSPPPPAK PKTHECSICG 60 VEFALGQALG GHMRRHRESG GDRKQTGLGL SPGSQAAAEG NRRRVLWWLD LNLTPSEN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192386.1	4e-40	PREDICTED: zinc finger protein ZAT11-like
TrEMBL	S8D056	5e-81	S8D056_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_006486058.1	2e-39	(Citrus sinensis)
STRING	XP_006436055.1	2e-39	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	5e-31	C2H2 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]