PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70738.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bZIP

Protein Properties

Length: 233aa MW: 25981.9 Da PI: 5.4601

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70738.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.6e-10	137	186	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + EPS70738.1 137 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQR 186 9****************************************998876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-16	133	197	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.714	135	198	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.4E-7	137	185	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.85E-11	137	188	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.0E-10	137	191	No hit	No description
CDD	cd14703	3.90E-21	138	187	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
PYSSSSSAMA MRSAHHRRAQ SELNFRLPED LDLAFDAAPG GSFEEDVGSE EDLFSTYMDM 60 DKLTTAAGSG MSDSISDNVE EERGKNTVPP RGRHRHSNSV DSTTSTLLFN DNTSASIEAK 120 KAMAPDKLAE LWTIDPKRAK RILANRQSAA RSKERKARYI SELERKVQTL QTEATTLSAQ 180 LTLFQRDTTG LSNENTELKL RLQAMEQQAQ LRDALNEALK QEVERLRMAT GEI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076587.1	1e-113	transcription factor RF2b
Swissprot	O22873	2e-92	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	S8E4N6	1e-169	S8E4N6_9LAMI; Uncharacterized protein (Fragment)
STRING	PGSC0003DMT400042946	1e-102	(Solanum tuberosum)
STRING	XP_010252066.1	1e-102	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-89	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]