PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70852.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family SBP
Protein Properties Length: 87aa    MW: 10010.4 Da    PI: 9.6052
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70852.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.2e-41481178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP  1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                +C ve+C adls +k+yh+rhkvCevh+k+pvvlv+g++qrfCqqCsrfhe+s+fD++krsCrrrLa+hnerrrk++a
  EPS70852.1  4 CCLVEDCGADLSACKKYHQRHKVCEVHAKSPVVLVDGIRQRFCQQCSRFHEVSQFDHTKRSCRRRLAGHNERRRKSTA 81
                6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.419279IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.1E-31266IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-38383IPR004333Transcription factor, SBP-box
PfamPF031103.3E-32578IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
ASPCCLVEDC GADLSACKKY HQRHKVCEVH AKSPVVLVDG IRQRFCQQCS RFHEVSQFDH  60
TKRSCRRRLA GHNERRRKST AESQKQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-315781184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082696.16e-48squamosa promoter-binding protein 2-like
SwissprotQ387402e-46SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBLS8EEA54e-56S8EEA5_9LAMI; Squamosa promoter-binding protein 2 (Fragment)
STRINGXP_006464784.11e-42(Citrus sinensis)
STRINGXP_006451806.11e-42(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.19e-38squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]