PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70963.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 250aa    MW: 26646.6 Da    PI: 9.0373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70963.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000387109123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cg+sF +   L  H  +H
  EPS70963.1  87 FTCKTCGRSFASFQALGGHRASH 109
                 89*********999998888877 PP
2zf-C2H212.40.00048166188123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+  F++   L  H+r+H
  EPS70963.1 166 HECSYCSAEFTSGQALGGHMRKH 188
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-1186111IPR007087Zinc finger, C2H2
SuperFamilySSF576672.47E-886109No hitNo description
SMARTSM003550.1187109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.59387114IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SuperFamilySSF576672.47E-8161188No hitNo description
PfamPF139121.7E-12165190IPR007087Zinc finger, C2H2
SMARTSM003550.026166188IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45166193IPR007087Zinc finger, C2H2
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEEASTEELD VPKGRRTKRF RPHSPLFATS SSSSSSSDKE STTTSEIDTA RCLILLSRGY  60
VASSPPPPAV AAVVPSSFSG ARSGGVFTCK TCGRSFASFQ ALGGHRASHS KPKNEQRSTV  120
MFSDEDDYFV PSTDHRNHSS LALRLNTAAA AAPPPPAKVA SSSRVHECSY CSAEFTSGQA  180
LGGHMRKHRG NNDGGSGSRN GFIARPSPSS NRTMMSIEEL QLLEMKKPRM GLTLDLNIPP  240
SDDGINGNNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077260.12e-52zinc finger protein ZAT5
TrEMBLS8E5A70.0S8E5A7_9LAMI; Uncharacterized protein
STRINGMigut.F01919.1.p1e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-28C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]