PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70979.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 171aa MW: 19656.4 Da PI: 10.0556

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70979.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.4e-06	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F r nL+ H r+H EPS70979.1 39 FVCEICNQGFQRDQNLQMHRRRH 61 89********************9 PP
2	zf-C2H2	18.4	6e-06	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k Hi+t+ EPS70979.1 116 WVCGKCSKGYAVQSDYKAHIKTC 138 58*******************98 PP
3	zf-C2H2	12.6	0.0004	146	164	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ EPS70979.1 146 DCGRVFSRVESFIEHQDTC 164 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.19E-6	38	61	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.1E-6	38	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	0.0067	39	57	No hit	No description
SMART	SM00355	0.0095	39	61	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	39	61	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	80	110	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.2E-4	107	137	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.19E-6	111	136	No hit	No description
SMART	SM00355	98	116	143	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
SDENGTAAVK RKRRPAGTPD PDAEVISLSP KTLLESDRFV CEICNQGFQR DQNLQMHRRR 60 HKVPWKLLKR ENPTARKRVF VCPESTCLHH DPAHALGDLV GIKKHFRRKH SDRKQWVCGK 120 CSKGYAVQSD YKAHIKTCGT RGHSCDCGRV FSRVESFIEH QDTCEMGRFR S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-17	114	165	5	56	Zinc finger protein JACKDAW
5b3h_F	1e-17	114	165	5	56	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618827.1	1e-113	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Refseq	XP_016500111.1	1e-113	PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
Refseq	XP_016500112.1	1e-113	PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X2
Refseq	XP_019227007.1	1e-113	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-104	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	S8CUD0	1e-124	S8CUD0_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009618827.1	1e-112	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1022	24	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-107	indeterminate(ID)-domain 14

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]