PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71010.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 242aa MW: 29028 Da PI: 10.1515

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71010.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.6	2.8e-22	24	104	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r e e ++ ++k +k lWe +s++m+e+g+ r+p qCk+kw+nl +r+k + e+++ ++p++++++ EPS71010.1 24 QWSSQETRDFLMIRAEHEPDFMKTKHNKLLWELISSRMKEKGYFRTPDQCKCKWKNLVTRFKGCDGLEGQQ-----VQFPFYNEVQ 104 7***************************************************************9999984.....3699999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0015	21	83	IPR001005	SANT/Myb domain
CDD	cd12203	1.94E-21	23	87	No hit	No description
Pfam	PF13837	5.7E-18	24	106	No hit	No description
PROSITE profile	PS50090	7.282	25	81	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
LHHHHHHQQL QYSGDQSTGE RFPQWSSQET RDFLMIRAEH EPDFMKTKHN KLLWELISSR 60 MKEKGYFRTP DQCKCKWKNL VTRFKGCDGL EGQQVQFPFY NEVQAILGSR IMWSESSTKK 120 KLSSSSSSSD EDTPSNSIRQ RKKKKKKTQA QQSSNEVAAM IKDTMEGLMK QQMQMEMQWM 180 KALEERRAME MEWRKKMEDL ERERAAMERT WREKEEQRRI REEARAERRD ALITILLNNL 240 AR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	1e-12	20	85	2	67	DNA binding protein GT-1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	146	QRKKKKKK
2	140	146	RKKKKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831841.1	1e-76	PREDICTED: trihelix transcription factor GT-3b
TrEMBL	S8CW14	1e-179	S8CW14_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.J00154.1.p	5e-76	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4187	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	7e-36	Trihelix family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]