PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71020.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WOX

Protein Properties

Length: 165aa MW: 18557.9 Da PI: 7.0156

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71020.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.2e-21	84	144	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t++ql++Le++F + +ps+++++e++ +l +++e++V++WFqNrRa+ k+ EPS71020.1 84 RQRWNPTPKQLQILEQMFDQgIGTPSKQKIKEITLELcqhgQISETNVYNWFQNRRARSKR 144 89***************99************************************97 PP
2	Wus_type_Homeobox	103.3	1.7e-33	84	146	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RW+Ptp+Q++iLe+++++G+ tP+k++i++it eL ++G+i+++NV++WFQNr+aR+++kq EPS71020.1 84 RQRWNPTPKQLQILEQMFDQGIGTPSKQKIKEITLELCQHGQISETNVYNWFQNRRARSKRKQ 146 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-16	80	148	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.366	80	145	IPR001356	Homeobox domain
SMART	SM00389	2.0E-11	82	149	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.68E-18	82	149	IPR009057	Homeodomain-like
Pfam	PF00046	5.2E-19	84	144	IPR001356	Homeobox domain
CDD	cd00086	7.68E-13	84	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MEPPPPDEGG EMMFVKVMTD EQIEILRKQI SVYAAICEQL VDLHKSMTDL AAGGGVGGGL 60 SNHHHHHHLY CDASSGGAHK ISGRQRWNPT PKQLQILEQM FDQGIGTPSK QKIKEITLEL 120 CQHGQISETN VYNWFQNRRA RSKRKQQQVG VMNKDESDVE SQNQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017243990.1	7e-65	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	7e-58	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	S8CW23	1e-121	S8CW23_9LAMI; Uncharacterized protein
STRING	XP_006467087.1	2e-62	(Citrus sinensis)
STRING	XP_006425279.1	2e-62	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-54	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]