PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71051.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 196aa    MW: 22374.8 Da    PI: 8.3752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71051.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.6e-121863454
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +h   E++RR+ i++ fe Lr+l+P++     +K++ a+i   A++YI++L
  EPS71051.1 18 KHLGPEKQRRELIKDNFEALRKLIPNP-----TKNDRASIMGDAINYINEL 63
                66667**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-141277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.6341463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-121580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-91765No hitNo description
PfamPF000104.5E-91763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-72069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
VFEFKSGEMD HSDGRNTKHL GPEKQRRELI KDNFEALRKL IPNPTKNDRA SIMGDAINYI  60
NELKKTASEL KALLQKKRSE KERVKRANCE NISLETDPNS CSWLQRKSYN TEVDVRIIMD  120
QVTVKLVHHK RIKCCLVLVS KIFDEFQLDL HDVAGGVIGD HYSFLFNSKI CEGAIVKASS  180
LANKLIEVME EQCAVV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012831429.12e-77PREDICTED: transcription factor bHLH91-like isoform X1
RefseqXP_012831430.16e-78PREDICTED: transcription factor bHLH91-like isoform X2
SwissprotQ84TK13e-51BH010_ARATH; Transcription factor bHLH10
TrEMBLS8D1381e-143S8D138_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.N01685.1.p7e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]