PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71296.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Protein Properties

Length: 250aa MW: 28370.1 Da PI: 8.8913

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71296.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.1	1.5e-13	15	105	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k l +d +rl +p +f+++hgg+ +++ + g r+W+v + ++ ++ ++l++GW++F+k+ gL+ g vvF+ +rse v+v EPS71296.1 15 FLKFL--NDDDFDSRLKIPSRFVKKHGGVFRRG--FCYLTAGGfprRRWRVWV--ERLGQDHFLGDGWERFAKDVGLNLGYYVVFSCADRSEL--EVSV 105 56666..55556668*********9997776..66666677888***..*****************************7766666..4444 PP
2	B3	38.7	1.7e-12	160	247	8	98
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +d+++s + +p +f+++ + + ++l+ g +W v++ + +g + +++GW++Fv +ng++ gD+v Fk++ s+ e +++ r EPS71296.1 160 ADHMES--MEIPASFMRDTAMAAYR--SVVLRGGGGggrGVWHVTI--EEIGGVFQMRSGWSNFVMDNGVEIGDSVWFKFIPGSGNEIDIHLTR 247 444444..79****999777555..5999998888999**..*****************************996677777777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.8E-16	10	111	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-16	11	111	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.221	13	109	IPR003340	B3 DNA binding domain
SMART	SM01019	7.4E-5	15	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.6E-10	15	105	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.92E-14	149	245	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-12	150	243	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.35	151	249	IPR003340	B3 DNA binding domain
SMART	SM01019	5.2E-4	154	249	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.6E-10	159	247	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGRRPSSGTD SSSSFLKFLN DDDFDSRLKI PSRFVKKHGG VFRRGFCYLT AGGFPRRRWR 60 VWVERLGQDH FLGDGWERFA KDVGLNLGYY VVFSCADRSE LEVSVYYTSG CRKENESGGI 120 PATPPKIKRE EEEEEEEKVF PCGRVQRAPK SWIFSRRLTA DHMESMEIPA SFMRDTAMAA 180 YRSVVLRGGG GGGRGVWHVT IEEIGGVFQM RSGWSNFVMD NGVEIGDSVW FKFIPGSGNE 240 IDIHLTRKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8D1S6	0.0	S8D1S6_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6635	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	3e-09	B3 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]