PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71330.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 230aa MW: 26004.3 Da PI: 8.3541

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71330.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75	1.5e-23	52	146	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YA+ +GF+vr+ k+++ +++ ++ ++Cskeg ++++ ++ + +++ +r+etrtgCka++ + +++g w+v++++++HnHe+ap EPS71330.1 52 LYCDYAQALGFNVRRGKQYYFMGTKKLRSKIYCCSKEGVKDDKPDSttpasAATASYKRPETRTGCKAMICFSCDDNGLWKVSRFVKDHNHEMAP 146 69*************************************9999977776667777*********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-21	52	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEGNSDEDGA VHPRSGGEVV DVNSGHDEAH IADSERRLWE QAVYSEEEAY MLYCDYAQAL 60 GFNVRRGKQY YFMGTKKLRS KIYCCSKEGV KDDKPDSTTP ASAATASYKR PETRTGCKAM 120 ICFSCDDNGL WKVSRFVKDH NHEMAPSYGR PLPKSGQAIL AASVHGMQGE GDKIRELSLQ 180 LAVAKRRAER FERQAASYKR QLKSIIHKME EHNDWLSMKI QKVVKGFDQL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093603.1	1e-112	uncharacterized protein LOC105173527 isoform X2
TrEMBL	S8CWV7	1e-173	S8CWV7_9LAMI; Uncharacterized protein
STRING	Migut.J01148.1.p	1e-110	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14517	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-22	FAR1 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]