PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71405.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family LBD
Protein Properties Length: 107aa    MW: 12069.9 Da    PI: 8.2025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71405.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.11.8e-445103199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC +dC++apyfp e+p+kfa vhk+FGa nv+kll++l +++reda+ssl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++
  EPS71405.1   5 PCAACKFLRRKCLPDCIYAPYFPPEEPQKFASVHKIFGAGNVSKLLRELLPHQREDAVSSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELDAANA 103
                 7*********************************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.394105IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-425102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
SYNSPCAACK FLRRKCLPDC IYAPYFPPEE PQKFASVHKI FGAGNVSKLL RELLPHQRED  60
AVSSLAYEAE ARVRDPVYGC VGAITFLQRQ VERLQKELDA ANADLIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-6131079113LOB family transfactor Ramosa2.1
5ly0_B1e-6131079113LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022893025.18e-69LOB domain-containing protein 25-like
RefseqXP_022893026.18e-69LOB domain-containing protein 25-like
RefseqXP_022893027.18e-69LOB domain-containing protein 25-like
SwissprotQ9FML43e-66LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLS8CX021e-72S8CX02_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_17s0000g09010.t012e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.41e-68LBD family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]