PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71422.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ZF-HD
Protein Properties Length: 255aa    MW: 28024.7 Da    PI: 8.6931
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71422.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.34.9e-3549106359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                   v YkeClkNhAaslGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRre+++
   EPS71422.1  49 VVAYKECLKNHAASLGGHAVDGCGEFMPSPATNpADPTSLKCAACGCHRNFHRREPDD 106
                  589****************************999*********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-2950104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.38352103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-3152103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2452111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.78E-16163235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-28171236IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-22174231IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MELTANSTVK TPEAESQTPT GIHLPESQTP FSNGLLKRHA PLHLHHPVVV AYKECLKNHA  60
ASLGGHAVDG CGEFMPSPAT NPADPTSLKC AACGCHRNFH RREPDDALAP PMLEFRPLHR  120
HHPPPLENSG GSPNDSPSPP PISSAYYPSA PHILMALSHG GTPISAVCPG PISRKRFRTK  180
FSQDQKEKML ELAEKLEWRM QRRDEYSINE FCNRIGVDKN VFKVWMHNNK NNFTKKNPTP  240
PSAGEGTNKL GSPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-201732321675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085755.13e-94zinc-finger homeodomain protein 9
SwissprotQ9LXG03e-67ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLS8EFN40.0S8EFN4_9LAMI; Uncharacterized protein
STRINGXP_008379353.13e-79(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-51homeobox protein 30
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]