PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71438.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 452aa    MW: 47911 Da    PI: 8.2584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71438.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-115176227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C ++++tG+C yG rC+F+H++
  EPS71438.1 51 DEPDCIYYLKTGFCGYGKRCRFNHPR 76
                6899********************96 PP
2zf-CCCH37.15.2e-1298122327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C+++++tG Ck+G++Ck++H++
  EPS71438.1  98 QPVCQYYMKTGLCKFGATCKYHHPK 122
                 689********************96 PP
3zf-CCCH36.77.1e-12143168227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++ +tG+CkyG +CkF+H++
  EPS71438.1 143 GEKECSYYVKTGFCKYGVTCKFHHPQ 168
                 7899********************97 PP
4zf-CCCH37.63.7e-12298324127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+++ rtG CkyG++Ck++H++
  EPS71438.1 298 PGQPICQYYIRTGDCKYGATCKYHHPQ 324
                 5789*********************97 PP
5zf-CCCH33.66.5e-11346370327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + C++++++G C++G++CkF H++
  EPS71438.1 346 APVCSHYSQNGVCRFGPSCKFDHPM 370
                 589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.9E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4934977IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-95176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-65378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-695122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.92595123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-698123IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-998122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4100122IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361141169IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6143169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723297325IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5302325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6340369IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009343371IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-8346370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5348369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MERYGGTQSI DVVPVDPVEE WVTPGGETGL EEPMWQLGLG SGFQSYPERP DEPDCIYYLK  60
TGFCGYGKRC RFNHPRDRSS AMGPFRSGGG DYPERVGQPV CQYYMKTGLC KFGATCKYHH  120
PKHGVGSSAP VTLNIYGWPL RPGEKECSYY VKTGFCKYGV TCKFHHPQPA AVQHVPDATT  180
TAIYHPTAPV QSSQQYGVIQ GNWPRPAILP AASYIPGSYG PPMIFPVPGW TPYPAPPPTS  240
PGAQPAVGAA GAIYGIGPLS SPSAYPAVAG PYISIPGGGG GASSSNKMES SLGFPKRPGQ  300
PICQYYIRTG DCKYGATCKY HHPQEFIAPK ANFVLSPMGL PLRPGAPVCS HYSQNGVCRF  360
GPSCKFDHPM RSLSYSPSAS SLTDMPVAPY PVGSTSATLA PSSSSSDLSP ETALLAAGGG  420
GHQRDTATAS FPPQVSSMNI SSDSVGSIFS RG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-137C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLS8E6I70.0S8E6I7_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-111C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]