PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71480.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 183aa MW: 19743.2 Da PI: 8.158

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71480.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H tH EPS71480.1 111 FECSSCKKVFNSHQALGGHRATH 133 89**************9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.37	18	40	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.36E-8	19	40	No hit	No description
PROSITE pattern	PS00028	0	20	40	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-7	20	41	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.36E-8	106	133	No hit	No description
Pfam	PF13912	7.0E-10	111	134	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.699	111	138	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	111	133	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	113	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MVSRPRNSRR PDAPSITSPC PECYRTFWSW KALFGHMRCH PTRQYRGMNP PENFRRRRRL 60 GKAPVEDEEE FTEEDHELAS CLLLLTNGSG EETAAVGPAS SGAVTQSSSG FECSSCKKVF 120 NSHQALGGHR ATHKNVKGCY AIGCCSSAAA GEPTSPIDLN LSAADGRSFI GGGGLILDLK 180 LGL

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the regulation of male germ cell division by DUO1. {ECO:0000269\|PubMed:24876252}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269\|PubMed:21285328}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022895992.1	5e-53	zinc finger protein ZAT3-like
Refseq	XP_022895993.1	5e-53	zinc finger protein ZAT3-like
Swissprot	O65499	7e-46	ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBL	S8CX52	1e-133	S8CX52_9LAMI; Uncharacterized protein
STRING	EOX97446	5e-50	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6385	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-43	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]