PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71493.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family G2-like
Protein Properties Length: 209aa    MW: 24109.8 Da    PI: 11.3486
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71493.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.91.1e-28458156
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
                k++++WtpeLH+rFv+aveqL G +kA+P++ile+m++++Lt+++v+SHLQkYR++
  EPS71493.1  4 KAKVDWTPELHRRFVQAVEQL-GLDKAVPSKILEIMGIDCLTRHNVASHLQKYRSH 58
                6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.064160IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-28261IPR009057Homeodomain-like
SuperFamilySSF466891.88E-19361IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-27458IPR006447Myb domain, plants
PfamPF002492.3E-8756IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
GKKKAKVDWT PELHRRFVQA VEQLGLDKAV PSKILEIMGI DCLTRHNVAS HLQKYRSHRK  60
HLLAREAEAA AWNQRRNMLP KDHPSPPWMT PPLPPPPPPT IGYPPPMTNF RPPPLHVWGH  120
PSVDQSIIHT WPPADPNFWI PPPHQSFFPP QLPPPVTKHV ESEISFGFQW QQPDTRSRNL  180
PPTSTPRRRA WTPRSRTCSR SRGCRCRWG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16156257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016188211.12e-57transcription activator GLK1 isoform X1
RefseqXP_016188212.12e-57transcription activator GLK1 isoform X2
RefseqXP_019249411.17e-57PREDICTED: transcription activator GLK1-like
RefseqXP_020974088.12e-57transcription activator GLK1 isoform X2
RefseqXP_025643542.12e-57transcription activator GLK1 isoform X1
RefseqXP_025643543.12e-57transcription activator GLK1 isoform X1
RefseqXP_025643544.12e-57transcription activator GLK1 isoform X2
RefseqXP_027908725.13e-57LOW QUALITY PROTEIN: transcription activator GLK1-like
SwissprotQ9SIV39e-48GLK1_ARATH; Transcription activator GLK1
TrEMBLS8E6M81e-149S8E6M8_9LAMI; Uncharacterized protein (Fragment)
STRINGGLYMA06G44330.16e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25322356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.18e-47GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  3. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  4. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  5. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  6. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]