PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71722.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 385aa    MW: 43228.8 Da    PI: 6.8138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71722.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005282104323
                 ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                 C+   Cgk+F +   L++H   H
  EPS71722.1  82 CSyeGCGKTFIDAGALRKHSHIH 104
                 77779**************7766 PP
2zf-C2H216.52.3e-05109133123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y+C+  +Cgk F ++s LkrH   H
  EPS71722.1 109 YTCHyeNCGKKFLDSSKLKRHYLIH 133
                 9********************9988 PP
3zf-C2H222.33.4e-07139163123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y+Cp   Cgk Fs   nL++H++tH
  EPS71722.1 139 YVCPheGCGKAFSLDFNLRSHMKTH 163
                 99**********************9 PP
4zf-C2H216.52.5e-05169193123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++Cp  dCgk++ + + Lk+Hi +H
  EPS71722.1 169 HVCPypDCGKRYAHEYKLKNHIGSH 193
                 79********************885 PP
5zf-C2H211.90.00071235260123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y Cp   C k + + + L+ H+r+ H
  EPS71722.1 235 YGCPyeGCEKAYIHEYKLNLHLRReH 260
                 679999*****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.0E-1475106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003280104IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78380109IPR007087Zinc finger, C2H2
PROSITE patternPS00028082104IPR007087Zinc finger, C2H2
SuperFamilySSF576674.13E-883133No hitNo description
Gene3DG3DSA:3.30.160.605.6E-13107129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0055109133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.565109138IPR007087Zinc finger, C2H2
PROSITE patternPS000280111133IPR007087Zinc finger, C2H2
SuperFamilySSF576674.69E-15120173No hitNo description
Gene3DG3DSA:3.30.160.607.0E-21130165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.7E-4139163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.882139168IPR007087Zinc finger, C2H2
PROSITE patternPS000280141163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-8166193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0064169193IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099169198IPR007087Zinc finger, C2H2
PROSITE patternPS000280171194IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-8230258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.53E-5231258No hitNo description
SMARTSM003550.051235260IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471235265IPR007087Zinc finger, C2H2
PROSITE patternPS000280237260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDPQIADSLL DRRHMSSNSR TLPVKWFKEW VPQDLVSTGG KCLVLKWVNE ATLNAIKERS  60
REPQGGEHDA EPEPTTEILF LCSYEGCGKT FIDAGALRKH SHIHGERQYT CHYENCGKKF  120
LDSSKLKRHY LIHTGERDYV CPHEGCGKAF SLDFNLRSHM KTHSQENYHV CPYPDCGKRY  180
AHEYKLKNHI GSHHEKTMLL LDATPKYSSA PVERPAKSTK SNTGVCGPAS AERPYGCPYE  240
GCEKAYIHEY KLNLHLRREH PGHFPEDNHH HQSKNGNEDG SDHDVAGYTP AKRKTPKSRA  300
KPNLKLPPSK VPLQSKSSAS RNGGTAAHST NVSKKAAATM AMTAAAQEDE EEDSEETEEE  360
NENNGGGGGD GWRYVNDDEE TEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34731932119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850433.11e-160PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-125YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLS8EGC50.0S8EGC5_9LAMI; Uncharacterized protein
STRINGMigut.B00804.1.p1e-160(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-128C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]