PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71753.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TALE
Protein Properties Length: 214aa    MW: 24345.3 Da    PI: 6.2583
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71753.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.13e-081521852154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  EPS71753.1 152 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 185
                 569*****************************87 PP
2ELK301.2e-10106127122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  EPS71753.1 106 ELKHELKQGYKEKIVDIREEIL 127
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.1E-11849IPR005541KNOX2
PfamPF037911.6E-11848IPR005541KNOX2
PROSITE profilePS512139.969106126IPR005539ELK domain
PfamPF037894.1E-7106127IPR005539ELK domain
SMARTSM011886.1E-4106127IPR005539ELK domain
PROSITE profilePS5007111.677126189IPR001356Homeobox domain
SuperFamilySSF466892.22E-16128193IPR009057Homeodomain-like
SMARTSM003893.5E-11128193IPR001356Homeobox domain
CDDcd000861.37E-11129190No hitNo description
Gene3DG3DSA:1.10.10.609.1E-26133190IPR009057Homeodomain-like
PfamPF059201.9E-18146185IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MQIFVVPLTH YVLLLSSFKE QLQQHVRVHA MEAVMACWEL EQSLQSLTGV APGEGTGATM  60
SDDDEDQGES EADLFEETLD GPDSMGFGPL VPTESERSLM ERVRQELKHE LKQGYKEKIV  120
DIREEILRKR RAGKLPGDTT SVLKAWWQAH SKWPYPTEED KARLVQETGL QLKQINNWFI  180
NQRKRNWHSN PSSSSSQKTK RKSSGSGEKS GSYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-13129193872Homeobox protein PKNOX1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084049.11e-137homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480011e-124KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLS8E7B81e-157S8E7B8_9LAMI; Uncharacterized protein
STRINGMigut.K00654.1.p1e-132(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-117KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]