PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71868.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family CPP
Protein Properties Length: 186aa    MW: 20298 Da    PI: 8.4055
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71868.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR53.93.6e-172058341
         TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                +k+CnCkkskClk+YCeCfaag++C + C C dC+Nk  
  EPS71868.1 20 CKRCNCKKSKCLKLYCECFAAGVYCVDLCACVDCFNKPA 58
                89**********************************976 PP
2TCR53.93.6e-17105143139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+C+N 
  EPS71868.1 105 RHKRGCNCKKSGCLKKYCECYQGGVGCSVNCRCEGCRNA 143
                 589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-161859IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.44919145IPR005172CRC domain
PfamPF036387.3E-132156IPR005172CRC domain
SMARTSM011144.0E-18105146IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12107143IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
SSSPKKKRRR GEQSGDGEGC KRCNCKKSKC LKLYCECFAA GVYCVDLCAC VDCFNKPAHE  60
GTVLATRKQI ESRNPLAFAP KVIRGSSDQP SETREDSSKT PASARHKRGC NCKKSGCLKK  120
YCECYQGGVG CSVNCRCEGC RNAFGRKDGS HVVADNEEDE MEGVKTTEEL ESSAAILETP  180
LGGRRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-202114212120Protein lin-54 homolog
5fd3_B2e-202114212120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
149KKKRRR
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00044PBMTransfer from AT3G22760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022878826.17e-89protein tesmin/TSO1-like CXC 2 isoform X2
SwissprotQ8L5482e-84TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBLS8E7R71e-131S8E7R7_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.G00370.1.p4e-85(Erythranthe guttata)
STRINGXP_006406130.11e-85(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69802128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.17e-87Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]