PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71955.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 69aa    MW: 7627.84 Da    PI: 11.4798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71955.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00081121323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C+ C++sF++   L  H  tH
  EPS71955.1  1 CKTCDRSFPSFQALGGHRTTH 21
                **********99999999888 PP
2zf-C2H214.88.1e-054264123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++Cg  F +   L  H+r+H
  EPS71955.1 42 HVCSICGVGFASGQALGGHMRRH 64
                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-11123IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097126IPR007087Zinc finger, C2H2
PROSITE patternPS000280121IPR007087Zinc finger, C2H2
SuperFamilySSF576678.8E-9164No hitNo description
SMARTSM0035536121IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-44169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.6E-124266IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0994264IPR007087Zinc finger, C2H2
SMARTSM003550.0414264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
CKTCDRSFPS FQALGGHRTT HKKAAPAPEE VAIVSLRNWR LHVCSICGVG FASGQALGGH  60
MRRHRRPFK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019159844.17e-22PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD42e-18ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLS8CY838e-44S8CY83_9LAMI; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr11P21920_0012e-21(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-21C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]