PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72028.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 380aa    MW: 42870.4 Da    PI: 10.2499
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72028.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015267292123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y C+   C+++F +k +L  H r+ +
  EPS72028.1 267 YGCEmeGCSMRFATKQELSLHERNvC 292
                 669999***************99877 PP
2zf-C2H215.64.7e-05291314223
                 EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                 +Cp   Cgk F ++ +L++H r+H
  EPS72028.1 291 VCPvkGCGKKFFSHKYLVQHRRVH 314
                 69999*****************99 PP
3zf-C2H214.40.00011350376123
                 EEET..TTTEEESSHHHHHHHHHH..T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                 y+C+   Cg++F+  s++ rH r+  H
  EPS72028.1 350 YVCTeaGCGQTFRFVSDFSRHKRKtgH 376
                 99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035531267289IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632290319IPR007087Zinc finger, C2H2
SMARTSM003550.0037290314IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-6291313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280292314IPR007087Zinc finger, C2H2
SuperFamilySSF576673.74E-10306348No hitNo description
Gene3DG3DSA:3.30.160.602.7E-10314342IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.824320349IPR007087Zinc finger, C2H2
SMARTSM003550.0036320344IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280322344IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-8338373No hitNo description
Gene3DG3DSA:3.30.160.607.6E-10343373IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.19350376IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.718350380IPR007087Zinc finger, C2H2
PROSITE patternPS000280352376IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
FLFCFADYAM LELRAKRMAE EMGRSDECSW SQVPMRRSGE EDERIIQLAV ESEGGIHGNG  60
DWAVKLGINL FYSASLSRSP LYSKQMHYNA VVYVAFGRSG DAGRKSEGGG TRKRSSRSVV  120
AGRWCGRVWT SGQAHPILLP SGAEDPHPAA DDGKKRKKRT TTTTTTAVTK TKPSPPPPTT  180
TSGRSLRRGN KRKKEDEPTL QEEFPLSNTW RRTRTSMKRD AAPPAKKAKK THQTEDHKKK  240
KNTNNKKAED GGGDDDDDDD GDGDCWYGCE MEGCSMRFAT KQELSLHERN VCPVKGCGKK  300
FFSHKYLVQH RRVHVDDRPL KCPWKGCKMA FKWAWARTEH IRVHTGARPY VCTEAGCGQT  360
FRFVSDFSRH KRKTGHTPKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-6626738023136Lysine-specific demethylase REF6
6a58_A1e-6626738023136Lysine-specific demethylase REF6
6a59_A1e-6626738023136Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKRKK
2186192RRGNKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834201.11e-118PREDICTED: lysine-specific demethylase REF6
TrEMBLS8E8520.0S8E852_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.I00266.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49882331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-64relative of early flowering 6
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]