PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72168.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 155aa    MW: 17043.1 Da    PI: 9.8623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72168.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-053860123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++    + H+r+H
  EPS72168.1 38 YRCEMCDMEFNTEKGVHGHMRVH 60
                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-53765No hitNo description
PROSITE profilePS5015711.8633865IPR007087Zinc finger, C2H2
SMARTSM003550.0033860IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-43864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MVRLMIRLMS SSRPSASSPV GTVTPQRQPP TRANVGGYRC EMCDMEFNTE KGVHGHMRVH  60
SRERGRTNGR KRKKKEAGCA ADIRLGFSND DGDEERKAAM ILVMLGRTEG EEAAAESLDT  120
TEYYLGGDSG RSDGGDDFRD TAQSRKKAGT KNKGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16173RERGRTNGRKRKK
26973RKRKK
36975RKRKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8E8I61e-109S8E8I6_9LAMI; Uncharacterized protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]