PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72274.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 350aa    MW: 37834.8 Da    PI: 7.6314
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72274.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000833760123
                EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                +kC+ C+k  s+ s +  H    H
  EPS72274.1 37 FKCHVCHKKLSTASGMAIHVLQvH 60
                89***************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080812.045867IPR003656Zinc finger, BED-type
SuperFamilySSF576677.41E-51362No hitNo description
SMARTSM00355181336IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801536IPR007087Zinc finger, C2H2
PROSITE profilePS501578.5173765IPR007087Zinc finger, C2H2
SMARTSM003550.13760IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803960IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGKKKKRGAV DKVWCYYCDR EFEDEKILVQ HQKAKHFKCH VCHKKLSTAS GMAIHVLQVH  60
KEQVSKVPNA KPGRESTEID IYGMEGIPAD ALAAHYGEDD EENFSKIAKI NSPATQVIPG  120
GYPQQSNLGS MPPFYNPRLP VPPSGWPVAP RPQPWYPQNP TVSLPPPPSV VPQQPLFPVR  180
NVQTSPAFQQ TLPITPPGLS AAISLPVSQP LFPVIPSSTS PFAAATSTGL AVSSSEVTGA  240
EPPFSFSSNS YYPSGISAAT TVSSHSYASG PNTGGPSIGP PPIIANKAPV TQSATNEVYL  300
VWEDEAMSME ERRLSMSKYQ VHDENSQMSS IDAAIDRRIS EGRFAGRMAL
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096842.11e-180protein SUPPRESSOR OF FRI 4 isoform X2
SwissprotQ9C5G01e-130SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLS8CXS80.0S8CXS8_9LAMI; Uncharacterized protein
STRINGMigut.M02008.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA599144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  3. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]