PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72298.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family CPP
Protein Properties Length: 153aa    MW: 16830.3 Da    PI: 8.4065
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72298.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR55.21.4e-172461340
         TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                +kgCnCkkskClk+YCeCfaag +C + C C dC+Nk 
  EPS72298.1 24 CKGCNCKKSKCLKLYCECFAAGIYCVDLCACIDCFNKP 61
                89**********************************96 PP
2TCR51.81.6e-16108146139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks C kkYCeC++ g+ Cs +C+Ce+CkN 
  EPS72298.1 108 RHKRGCNCKKSGCFKKYCECYQGGVGCSINCRCEGCKNA 146
                 589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-182263IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.28523148IPR005172CRC domain
PfamPF036381.8E-132560IPR005172CRC domain
SMARTSM011147.7E-17108149IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.3E-12110146IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
EDINQISPKK KRRRAEQSGD GEGCKGCNCK KSKCLKLYCE CFAAGIYCVD LCACIDCFNK  60
PVHEETVLAT RKQIESRNPL AFAPKVIRGS DQPSETMDDS STTPASARHK RGCNCKKSGC  120
FKKYCECYQG GVGCSINCRC EGCKNAFGRK DGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-202514512120Protein lin-54 homolog
5fd3_B2e-202514512120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1813KKKRRR
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090684.12e-90LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
SwissprotF4JIF56e-83TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLS8E8T21e-106S8E8T2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.G00370.1.p8e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.16e-66TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]