PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72463.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 352aa    MW: 39004.5 Da    PI: 4.8578
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72463.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-4971332128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 ppGfrFhPtd el+++yLk+kv+g+k+++ e+i+ev+iyk+ PwdLp  +++k+++ ew+fF++r+kkya+g+r +ratk+gyWk+tgkd+++   + +
  EPS72463.1   7 PPGFRFHPTDIELIMYYLKRKVTGRKFHF-EAISEVNIYKFSPWDLPdmSCLKSKDLEWFFFCPREKKYASGTRVKRATKNGYWKTTGKDRPISY-NAA 103
                 9***************************9.89**************96447888888*************************************9.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  vg+ ktLvf+ g+ap+ge+tdWv+heyr+
  EPS72463.1 104 IVGTVKTLVFHMGNAPRGERTDWVIHEYRI 133
                 ****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-583155IPR003441NAC domain
PROSITE profilePS5100554.7056155IPR003441NAC domain
PfamPF023652.4E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKASIPPGF RFHPTDIELI MYYLKRKVTG RKFHFEAISE VNIYKFSPWD LPDMSCLKSK  60
DLEWFFFCPR EKKYASGTRV KRATKNGYWK TTGKDRPISY NAAIVGTVKT LVFHMGNAPR  120
GERTDWVIHE YRILDKHLAA SGLEDAYVLC KLFKKSGPGP KNGAQYGAPF VEADWSDQEI  180
DDAVNNSTSS ALLPENQFSN ATVLSDHGIP SSSADHGKAS RGEDDDDVIR MLSQFNDETM  240
CSEDAGINQG DLAAVKGKIP LDSCDGFFNI FEGLGDLDNN PTASPPNEGT PLDLFSSLYH  300
QTTDSVFPDD SSYIELDDLL VAFPCSAEGT KASHPSADEV LRCSNCSNRY ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-46515614169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554699.11e-123NAC domain-containing protein 82-like isoform X2
SwissprotQ9FY827e-87NAC82_ARATH; NAC domain-containing protein 82
TrEMBLS8E9C00.0S8E9C0_9LAMI; Nam-like protein 2
STRINGMigut.H00727.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60502334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-89NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]