PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72496.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family DBB
Protein Properties Length: 120aa    MW: 13194.2 Da    PI: 5.6053
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72496.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.74.9e-081040434
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                + C+ +e+  ++lfC  ++  lC++C ++ H
  EPS72496.1 10 TLCDVCESAAAILFCAADEAALCRSCDDKVH 40
                57*************************9998 PP
2zf-B_box27.27.9e-096098337
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                 ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  EPS72496.1 60 VPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 98
                689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-9754IPR000315B-box-type zinc finger
PROSITE profilePS501199.798754IPR000315B-box-type zinc finger
PfamPF006431.7E-61049IPR000315B-box-type zinc finger
CDDcd000213.04E-51052No hitNo description
SMARTSM003369.1E-1158103IPR000315B-box-type zinc finger
PROSITE profilePS501198.71758103IPR000315B-box-type zinc finger
PfamPF006431.3E-66097IPR000315B-box-type zinc finger
CDDcd000214.94E-66191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
EEVKLGIMRT LCDVCESAAA ILFCAADEAA LCRSCDDKVH MCNKLASRHV RVGLAEPNAV  60
PRCDICENAP AFFYCEIDGS SLCLQCDMIV HVGGKRTHGR YLMLRQRAEF PGDRSGIAEE
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088488.11e-72B-box zinc finger protein 19
RefseqXP_020551620.11e-72B-box zinc finger protein 19
RefseqXP_020551621.11e-72B-box zinc finger protein 19
RefseqXP_020551622.11e-72B-box zinc finger protein 19
SwissprotC0SVM51e-65BBX19_ARATH; B-box zinc finger protein 19
TrEMBLS8D5292e-82S8D529_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0009s12730.13e-71(Populus trichocarpa)
STRINGcassava4.1_016111m5e-71(Manihot esculenta)
STRINGXP_010271471.15e-71(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-68DBB family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]