PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72530.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 132aa MW: 15006.1 Da PI: 8.421

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72530.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00035	27	47	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 y+C++C ++ + +n+++H r EPS72530.1 27 YRCKKCRRMVASEENMVSHRR 47 9******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MEKSSSSSSS IETNNPSTAD SKPPVIYRCK KCRRMVASEE NMVSHRRGEG QKCFKWNKRN 60 ETSRNECSSI FVEPMKWMMQ TVDEGCVEAK LECIGCKARL GSFNWAGMQC SCGSWINPAF 120 QLQKSRIDEC PF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6n8m_Y	8e-19	6	132	209	346	Tyrosine-protein phosphatase YVH1
6n8n_Y	8e-19	6	132	209	346	Tyrosine-protein phosphatase YVH1
6n8o_Y	8e-19	6	132	209	346	Tyrosine-protein phosphatase YVH1
6rzz_s	8e-19	6	132	209	346	Tyrosine-protein phosphatase YVH1
6s05_s	8e-19	6	132	209	346	Tyrosine-protein phosphatase YVH1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096435.1	2e-60	probable inactive dual specificity protein phosphatase-like At4g18593
Swissprot	Q570P7	8e-52	DUSL1_ARATH; Probable inactive dual specificity protein phosphatase-like At4g18593
TrEMBL	S8CZM6	2e-92	S8CZM6_9LAMI; Uncharacterized protein
STRING	Migut.M01043.1.p	3e-59	(Erythranthe guttata)

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]