PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72536.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 213aa MW: 22953.6 Da PI: 9.7213

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72536.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.1	2.6e-35	23	80	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++cprC+s ntkfCyynn s sqPryfCk+Crr+Wt+GG+lrnvPvGgg+rk k+++ EPS72536.1 23 PRDCPRCNSPNTKFCYYNNQSFSQPRYFCKSCRRFWTQGGTLRNVPVGGGSRKIKEKK 80 679**************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.13	24	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-31	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-18	29	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDTAISDEKP ARIMAARPPP PPPRDCPRCN SPNTKFCYYN NQSFSQPRYF CKSCRRFWTQ 60 GGTLRNVPVG GGSRKIKEKK TPPPCDSPFS PAIPFVGLAA PSHLISPVGG SSSYAVGGCY 120 SSLSAFNYGT ARYPTANGGG NTPSPPVNFG RYAPNMSLSQ GGFQQHYSVG HQQRSFHLAS 180 GGASSSTAVV GGHYYAAPKS EWPEYYPDFS RHS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096324.2	4e-30	dof zinc finger protein DOF3.1
TrEMBL	S8D551	1e-153	S8D551_9LAMI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	6e-26	Dof family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]