PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72578.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 209aa    MW: 23748.6 Da    PI: 9.8494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72578.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192677156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +gy+GVr++  +g+WvAeIr+p +   r r +lg+f taeeAa a+++a+++l+ge
  EPS72578.1 26 CGYRGVRQRT-WGKWVAEIREPHK---RSRLWLGSFATAEEAAVAYDEAARRLYGE 77
                79*****999.**********732...5*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.05E-292686No hitNo description
PfamPF008472.0E-122677IPR001471AP2/ERF domain
SMARTSM003801.7E-332790IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-212785IPR016177DNA-binding domain
PROSITE profilePS5103222.4972784IPR001471AP2/ERF domain
PRINTSPR003673.0E-102839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-302885IPR001471AP2/ERF domain
PRINTSPR003673.0E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDNCPPFKPW KKGPARGKGG PQNASCGYRG VRQRTWGKWV AEIREPHKRS RLWLGSFATA  60
EEAAVAYDEA ARRLYGEDAY LNLPHLRSTF DPSRPSHQHH RKFKWFAAKD FARQSHANGL  120
LNLNAQPSVN FVHQRLQELK KKTGAIWSGN VVPESSSSSL SNDPKIDLQI TREDNDNEAE  180
TCSKMTSDEK PQLDLNEFLQ QIGVLKKDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-172884663ATERF1
3gcc_A3e-172884663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075213.12e-86dehydration-responsive element-binding protein 2F
SwissprotQ9SVX51e-70DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLS8E9M31e-155S8E9M3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.J01780.1.p4e-82(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.16e-61ERF family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]