PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72738.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WOX

Protein Properties

Length: 228aa MW: 25245.2 Da PI: 5.3173

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72738.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.1	9.4e-16	3	63	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ EPS72738.1 3 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 63 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.7	6.9e-35	2	65	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q EPS72738.1 2 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 65 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.353	1	64	IPR001356	Homeobox domain
SMART	SM00389	2.1E-6	1	68	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-13	3	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-14	3	71	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-8	3	69	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
PVRSRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE KFGSVGDANV FYWFQNRRSR 60 SRRRQRQLQA AVLAGGGGAA PAVSGTPEFV ASDCYYPVSC WASSSGLDGI NNNANHINNN 120 NNNNNNNNNN NLSELFHFPA MATDLDENPK FFFEDSSALQ TRRPEVITVF INGVAMEIAG 180 GPMEMKATFG GDFLLVHCSG TVVPVDEYGF LAEGLRDGEN YFLVNSIF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069976.1	2e-64	WUSCHEL-related homeobox 11-like
Swissprot	Q8GY25	3e-51	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	S8EA16	1e-167	S8EA16_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_002525671.1	4e-56	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	3e-33	WUSCHEL related homeobox 12

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]