PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72817.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family G2-like
Protein Properties Length: 229aa    MW: 25974.9 Da    PI: 7.2378
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72817.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.77.4e-3050104155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kprlrWtpeLH rF++av++LGG++kAtPk il++m+++g++l+h+kSHLQk+Rl
  EPS72817.1  50 KPRLRWTPELHGRFLKAVHELGGPNKATPKGILNTMEIDGISLHHLKSHLQKFRL 104
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-1548104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-2649104IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-2350105IPR006447Myb domain, plants
PfamPF002494.0E-652102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEARVHRKNL APRRRRSAEL SSTADGEDSF RFRNRKDDSD SDRSSAVVPK PRLRWTPELH  60
GRFLKAVHEL GGPNKATPKG ILNTMEIDGI SLHHLKSHLQ KFRLGKFGRR LWKKEQFLSA  120
EFYGEFSNPI PLQLQRSWSS SSDYLTNPFA AEADQIEIDY SCGKMDDEAR EELILQFGNE  180
FSFSGAGGRR DQISFPMHFD NELMKDYLNS LNKDSDGFTA GDGDSGAGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1950107158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082882.14e-31myb family transcription factor APL-like isoform X2
TrEMBLS8EJN41e-168S8EJN4_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1791044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.21e-25G2-like family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]