PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS72960.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21560.6 Da    PI: 6.522
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS72960.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.7e-231663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie ks  qvtfskRr+g++KKA+EL++LC++e+a+i+fs+ gk++ +
  EPS72960.1 16 KIEAKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKIFSF 63
                699*****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-32766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.726767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-26879IPR002100Transcription factor, MADS-box
CDDcd002659.18E-35884No hitNo description
PRINTSPR004045.4E-19929IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251663IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAKRPSLGRQ KIKIAKIEAK SHLQVTFSKR RAGLFKKASE LCTLCGVEIA IIVFSPAGKI  60
FSFGHPDVRL LVDRYLSRNS GESSGLSPPP SNGNGFSELN FHLDQILEEV EMERERGEIL  120
DGAGKSNGRY WWEEPVEKLG LQEAEQLRDA MEELRKNVGQ IILRFGFLDP YNHDGFIGCS  180
GPNDNLEFLY GF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088151.16e-70agamous-like MADS-box protein AGL62
SwissprotQ4PSU42e-50AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLS8D0Q81e-138S8D0Q8_9LAMI; Uncharacterized protein
STRINGXP_009761267.16e-69(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-46AGAMOUS-like 61
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]