PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS72981.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

LBD

Protein Properties

Length: 144aa MW: 15507.8 Da PI: 10.465

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS72981.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.1	7.2e-39	24	125	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC ++Cv+a +f ++q ++kfa+vhk+FGasnv+kll+++p ++r+da+ +++yeA+ar++dPvyG+v++il+lq+q+ +l+ el++++ EPS72981.1 24 PCGACKFLRRKCMSGCVFASHFSSDQgAAKFAAVHKVFGASNVSKLLTHVPVNRRNDAVVTICYEAQARLSDPVYGCVSTILALQHQVGSLQRELSMVQ 122 7**********************989*******************************************************************99 PP DUF260 99 eel 101 ++l EPS72981.1 123 TQL 125 885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.423	23	125	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-39	24	122	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:1900150	Biological Process	regulation of defense response to fungus

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
RPSSQPHRRS AVSDAAAPAP AISPCGACKF LRRKCMSGCV FASHFSSDQG AAKFAAVHKV 60 FGASNVSKLL THVPVNRRND AVVTICYEAQ ARLSDPVYGC VSTILALQHQ VGSLQRELSM 120 VQTQLMNTRI AIANALQNGR HQHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	21	126	8	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	21	126	8	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021621992.1	4e-70	LOB domain-containing protein 20-like
Swissprot	Q9SRV3	3e-65	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	S8D6E3	1e-101	S8D6E3_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_008391783.1	3e-67	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	4e-63	LOB domain-containing protein 20

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]